Adding Library Files from Within a Project

Missing library files can be added when setting up tasks within a project, without having to navigate to the library file management page. The user interface will vary depending on the task and which library files already exist on your system. Below is one examples scenario.

Add a missing gene set file for enrichment analysis

1. Under the Analyses tab of a project, select a Feature list data node

2. Choose Biological interpretation from the menu on the right, followed by Gene set enrichment

3. Select Gene set database radio button for Database. If the species and assembly you want do not appear in the Assembly drop-down list, select New assembly... (Figure 1)

Figure 1. If no gene sets are associated with the assembly, click New assembly to add one.

1. If you are working with an assembly/species supported by Connected Multiomics (e.g. human), choose a gene set from the Gene set database drop-down list (Figure 2), select the Download gene set database radio button and select Create. Alternatively, choose Add gene set database from the Gene set database drop-down list, manually type the custom gene set name and click Create to import your own gene set from the server or URL (Figure 3). Characters such as $ * | \ : " < > ? / % cannot be used in custom names. If you are working with a custom species/assembly (e.g. for a non-model organism), only the Add gene ontology source option is available.

Figure 2. Create gene set database dialog for Connected Multiomics supported species from within a project.

Figure 3. Import a gene set database for non-supported species from within a project.