Local Secondary Analysis
DRAGEN Protein Quantification can be run locally after the installation of the local solution on a DRAGEN phase 4 server by an FAS.
To initiate a run:
DRAGEN_Protein_Quantification-<version>.sh
-r <full path to run folder>
-s <full path to samplesheet>
--analysisFolder <full path to output folder>
The --analysisFolder
parameter is optional. If no path is provided, output files will be put in a subdirectory of the folder where the command is being run.
The -s
parameter is optional if the sample sheet file is included in the run folder.
For details on the parameters used with the script, execute the following command.
DRAGEN_Protein_Quantification-<version>.sh -h
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