DRAGEN Report

Running the Illumina DRAGEN Single Cell app produces a DRAGEN report in HTML format which includes QC metrics for trimming, fastQC, mapping, and single cell analysis as well as a barcode rank plot and UMAP. Below is a description of metrics and plots on each tab of the DRAGEN report.

Single-Cell RNA

Single-Cell Clustering

Trimmer

DRAGEN-FastQC

Mapping